PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0107s0039.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 364aa    MW: 40019.1 Da    PI: 6.6055
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0107s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.41.4e-1683170286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W++  v  L+e+++e+  +l+rg+l+ ++We+v++++    +     ++++qCk k+enl++ryk +k+++   t  +ss +p+f +++
  Mapoly0107s0039.1.p  83 WSECAVNYLLEVYEEKYVSLSRGNLRSNDWEDVARYVnfkcEGSRSAKTAEQCKWKMENLKRRYKVEKQRQAA-TGAVSSLWPFFPRMD 170
                          99***********************************99766666789**********************998.699999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-1982172No hitNo description
PROSITE profilePS509129.387232281IPR009039EAR
Gene3DG3DSA:1.10.287.10803.1E-30235330No hitNo description
SuperFamilySSF1013866.69E-38235353No hitNo description
CDDcd115378.02E-47241331No hitNo description
PfamPF126431.7E-9269348IPR025984MazG-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASGGGAEQH LPHHLQQHAG SVDVQSVVGV SGMGDSPGEG EGQAGDLVVG GHQPPASEGK  60
GIKKAKREVV GGEEKKKENP TDWSECAVNY LLEVYEEKYV SLSRGNLRSN DWEDVARYVN  120
FKCEGSRSAK TAEQCKWKME NLKRRYKVEK QRQAATGAVS SLWPFFPRMD EMLISSFKFV  180
ATSPENGSGD AEDHPANVSV VSFSPQRVNR GAHAKAEVGF KKESDVYGSC AVGSVTIKEL  240
QKRMADFARE RDWDQFHSPR NLLLALVGEV GELSEIFQWK GEVPRGLPGW NVSEKEHLGE  300
ELSDVLLYLV RLADICEVDL GQAALRKIKK NAKKYPVELC KGTARKYTPC ENPNGDDVAL  360
DKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2a3q_A3e-3823634830142hypothetical protein
2a3q_B3e-3823634830142hypothetical protein
2q4p_A3e-3823634830142Protein RS21-C6
2q4p_B3e-3823634830142Protein RS21-C6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.26e-25Trihelix family protein